Mercurial > repos > iracooke > galaxy_protk

view tool_dependencies.xml @ 1:32c643142290 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Fix
author Ira Cooke <iracooke@gmail.com>
date Thu, 06 Jun 2013 15:34:30 +1000
parents 8bb76a3347c9
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="galaxy_protk" version="1.2.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
                <action type="shell_command">sh install_protk.sh 1.2.2</action>
                <action type="move_file">
                    <source>install_protk.sh</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$HOME/.rvm/bin/</environment_variable>
                </action>                
            </actions>
        </install>
        <readme>
            This package installs the protk rubygem which provides facilities for running various proteomics tools via galaxy. 

            For more about protk see https://bitbucket.org/iracooke/protk
        </readme>
    </package>
</tool_dependency>