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comparison projective_transformation.xml @ 2:7224195de47a draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 40b2eeecc9e15be0b710f5e5195ac6f3b3b83c39"
author imgteam
date Fri, 14 Jan 2022 03:06:40 +0000
parents 1baeb1ec9d34
children f1ef9c8f188a
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1:1baeb1ec9d34 2:7224195de47a
1 <tool id="ip_projective_transformation" name="Projective Transformation" version="0.0.4"> 1 <tool id="ip_projective_transformation" name="Projective Transformation" version="0.1.0" profile="20.05">
2 <description>Projective Transformation</description> 2 <description>2D Projective Transformation</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 4 <requirement type="package" version="0.18.1">scikit-image</requirement>
5 <requirement type="package" version="0.23.4">pandas</requirement> 5 <requirement type="package" version="1.2.4">pandas</requirement>
6 <requirement type="package" version="1.15.4">numpy</requirement> 6 <requirement type="package" version="1.20.2">numpy</requirement>
7 <requirement type="package" version="1.1.0">scipy</requirement> 7 <requirement type="package" version="1.6.2">scipy</requirement>
8 <requirement type="package" version="0.15.1">tifffile</requirement> 8 <requirement type="package" version="2020.10.1">tifffile</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="aggressive"> 10 <command detect_errors="aggressive">
11 <![CDATA[ 11 <![CDATA[
12 python '$__tool_directory__/projective_transformation.py' 12 python '$__tool_directory__/projective_transformation.py'
13 '$fixed_image' 13 '$fixed_image'
14 '$moving_image' 14 '$moving_image'
15 '$warp_matrix' 15 '$warp_matrix'
16 ./out.png 16 ./out
17 ]]> 17 ]]>
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param name="moving_image" type="data" format="png" label="Moving Image" /> 20 <param name="moving_image" type="data" format="tiff,png,jpg" label="Moving image (to be transformed)" />
21 <param name="fixed_image" type="data" format="png" label="Fixed Image" /> 21 <param name="fixed_image" type="data" format="tiff,png,jpg" label="Fixed image (the reference)" />
22 <param name="warp_matrix" type= "data" format="tabular" label="Warp Matrix" /> 22 <param name="warp_matrix" type="data" format="tabular" label="Transformation matrix" />
23 </inputs> 23 </inputs>
24 <outputs> 24 <outputs>
25 <data format="png" name="out" from_work_dir="out.png" /> 25 <data format_source="moving_image" name="warped_image" from_work_dir="out" />
26 </outputs> 26 </outputs>
27 <tests> 27 <tests>
28 <test> 28 <test>
29 <param name="fixed_image" value="sample1.png"/> 29 <param name="fixed_image" value="sample1.png"/>
30 <param name="moving_image" value="sample2.png"/> 30 <param name="moving_image" value="sample2.png"/>
31 <param name="warp_matrix" value="warp_matrix.tsv"/> 31 <param name="warp_matrix" value="warp_matrix.tsv"/>
32 <output name="out" value="yam.png" ftype="png" compare="sim_size"/> 32 <output name="warped_image" value="yam.png" ftype="png" compare="sim_size"/>
33 </test> 33 </test>
34 </tests> 34 </tests>
35 <help> 35 <help>
36 **What it does** 36 **What it does**
37 37
38 This tool performs a projective transformation of the input (moving) image so that it fits the fixed image. 38 This tool performs a projective transformation of the moving image so that it fits the fixed image.
39 Multi-channel and RGB images are supported.
39 </help> 40 </help>
40 <citations> 41 <citations>
41 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 42 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
42 </citations> 43 </citations>
43 </tool> 44 </tool>