Mercurial > repos > imgteam > imagej2_find_edges
diff imagej2_find_edges.xml @ 0:57735140f518 draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
| author | imgteam |
|---|---|
| date | Tue, 17 Sep 2019 16:55:40 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/imagej2_find_edges.xml Tue Sep 17 16:55:40 2019 -0400 @@ -0,0 +1,47 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="imagej2_find_edges" name="Find edges" version="@WRAPPER_VERSION@.0"> + <description></description> + <macros> + <import>imagej2_macros.xml</import> + </macros> + <expand macro="fiji_requirements" /> + <command> +<![CDATA[ + python $__tool_directory__/imagej2_find_edges.py + --input "$input" + --input_datatype $input.ext + --jython_script $__tool_directory__/imagej2_find_edges_jython_script.py + --output_datatype $output.ext + --output "$output" +]]> + </command> + <inputs> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/> + </inputs> + <outputs> + <data name="output" format_source="input" label="${tool.name} on ${on_string}"/> + </outputs> + <tests> + <test> + <param name="input" value="blobs.gif" /> + <output name="output" file="blobs_find_edges.gif" compare="sim_size" /> + </test> + </tests> + <help> + +**What it does** + +Uses a Sobel edge detector to highlight sharp changes in intensity in the active image. +The two 3x3 convolution kernels shown below are used to generate vertical and horizontal +derivatives. The final image is produced by combining the two derivatives using the square +root of the sum of the squares. + +``1 2 1 1 0 -1`` + +``0 0 0 2 0 -2`` + +``-1 -2 -1 1 0 -1`` + + </help> + <expand macro="fiji_headless_citations" /> +</tool>