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comparison imagej2_find_edges.xml @ 0:57735140f518 draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author imgteam
date Tue, 17 Sep 2019 16:55:40 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="imagej2_find_edges" name="Find edges" version="@WRAPPER_VERSION@.0">
3 <description></description>
4 <macros>
5 <import>imagej2_macros.xml</import>
6 </macros>
7 <expand macro="fiji_requirements" />
8 <command>
9 <![CDATA[
10 python $__tool_directory__/imagej2_find_edges.py
11 --input "$input"
12 --input_datatype $input.ext
13 --jython_script $__tool_directory__/imagej2_find_edges_jython_script.py
14 --output_datatype $output.ext
15 --output "$output"
16 ]]>
17 </command>
18 <inputs>
19 <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/>
20 </inputs>
21 <outputs>
22 <data name="output" format_source="input" label="${tool.name} on ${on_string}"/>
23 </outputs>
24 <tests>
25 <test>
26 <param name="input" value="blobs.gif" />
27 <output name="output" file="blobs_find_edges.gif" compare="sim_size" />
28 </test>
29 </tests>
30 <help>
31
32 **What it does**
33
34 Uses a Sobel edge detector to highlight sharp changes in intensity in the active image.
35 The two 3x3 convolution kernels shown below are used to generate vertical and horizontal
36 derivatives. The final image is produced by combining the two derivatives using the square
37 root of the sum of the squares.
38
39 ``1 2 1 1 0 -1``
40
41 ``0 0 0 2 0 -2``
42
43 ``-1 -2 -1 1 0 -1``
44
45 </help>
46 <expand macro="fiji_headless_citations" />
47 </tool>