# HG changeset patch # User imgteam # Date 1576663045 0 # Node ID faa34f06aa6c48833f868b149f6525aa9e6a5647 # Parent 784d5cf56c82c2e144bc57e5dd6c9371e2badfcc "planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90" diff -r 784d5cf56c82 -r faa34f06aa6c count_objects.py --- a/count_objects.py Sat Feb 09 14:16:39 2019 -0500 +++ b/count_objects.py Wed Dec 18 09:57:25 2019 +0000 @@ -4,14 +4,14 @@ import numpy as np import os import skimage.io -from skimage.measure import regionprops +from skimage.measure import regionprops parser = argparse.ArgumentParser(description='Count Objects') parser.add_argument('input_file', type=argparse.FileType('r'), help='Label input file') parser.add_argument('output_file', type=argparse.FileType('w'), help='Tabular output file') -args = parser.parse_args() +args = parser.parse_args() img_raw = skimage.io.imread(args.input_file.name) res = len(regionprops(img_raw)) diff -r 784d5cf56c82 -r faa34f06aa6c count_objects.xml --- a/count_objects.xml Sat Feb 09 14:16:39 2019 -0500 +++ b/count_objects.xml Wed Dec 18 09:57:25 2019 +0000 @@ -3,13 +3,14 @@ scikit-image numpy + tifffile - +