Mercurial > repos > imgteam > count_objects
comparison count_objects.xml @ 0:784d5cf56c82 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
| author | imgteam |
|---|---|
| date | Sat, 09 Feb 2019 14:16:39 -0500 |
| parents | |
| children | faa34f06aa6c |
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| -1:000000000000 | 0:784d5cf56c82 |
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| 1 <tool id="ip_count_objects" name="Count Objects" version="0.0.4"> | |
| 2 <description>in labled images</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
| 5 <requirement type="package" version="1.15.4">numpy</requirement> | |
| 6 </requirements> | |
| 7 <command> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/count_objects.py' '$input' '$output' | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="tiff" label="Source file" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="tabular" name="output" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="input.tiff"/> | |
| 21 <output name="output" value="table.tsv" ftype="tabular"/> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help> | |
| 25 **What it does** | |
| 26 | |
| 27 This tool counts objects in a labeled image. | |
| 28 </help> | |
| 29 <citations> | |
| 30 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 31 </citations> | |
| 32 </tool> |