Mercurial > repos > imgteam > color_deconvolution
diff color-deconvolution.xml @ 0:85a9449d1dea draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:15:00 -0500 |
parents | |
children | 29110ca1b63a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/color-deconvolution.xml Sat Feb 09 14:15:00 2019 -0500 @@ -0,0 +1,92 @@ +<tool id="ip_color_deconvolution" name="Color Deconvolution" version="0.7"> + <description>Color deconvolution</description> + <requirements> + <requirement type="package" version="0.14.2">scikit-image</requirement> + <requirement type="package" version="4.0.0">pillow</requirement> + <requirement type="package" version="0.18.1">scikit-learn</requirement> + <requirement type="package" version="1.12">numpy</requirement> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/color_deconvolution.py' '$input' '$output' '$convtype' + ]]> + </command> + <inputs> + <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file with 3 channels"/> + <param name="convtype" type="select" label="Transformation type"> + <option value="ica" selected="True">ica</option> + <option value="pca">pca</option> + <option value="nmf">nmf</option> + <option value="fa">fa</option> + <option value="xyz2rgb">xyz2rgb</option> + <option value="rgb_from_rbd">rgb_from_rbd</option> + <option value="rgb_from_hdx">rgb_from_hdx</option> + <option value="rgb2hsv">rgb2hsv</option> + <option value="rgb_from_bro">rgb_from_bro</option> + <option value="bpx_from_rgb">bpx_from_rgb</option> + <option value="hed_from_rgb">hed_from_rgb</option> + <option value="rgbcie2rgb">rgbcie2rgb</option> + <option value="hdx_from_rgb">hdx_from_rgb</option> + <option value="xyz2luv">xyz2luv</option> + <option value="rgb2lab">rgb2lab</option> + <option value="hpx_from_rgb">hpx_from_rgb</option> + <option value="rgb_from_fgx">rgb_from_fgx</option> + <option value="rgb_from_gdx">rgb_from_gdx</option> + <option value="lab2xyz">lab2xyz</option> + <option value="rgb_from_hpx">rgb_from_hpx</option> + <option value="lab2rgb">lab2rgb</option> + <option value="rgb2rgbcie">rgb2rgbcie</option> + <option value="bex_from_rgb">bex_from_rgb</option> + <option value="xyz2lab">xyz2lab</option> + <option value="rgb_from_bex">rgb_from_bex</option> + <option value="fgx_from_rgb">fgx_from_rgb</option> + <option value="rbd_from_rgb">rbd_from_rgb</option> + <option value="rgb2hed">rgb2hed</option> + <option value="hed2rgb">hed2rgb</option> + <option value="luv2rgb">luv2rgb</option> + <option value="luv2xyz">luv2xyz</option> + <option value="lch2lab">lch2lab</option> + <option value="rgb2luv">rgb2luv</option> + <option value="ahx_from_rgb">ahx_from_rgb</option> + <option value="rgb_from_hax">rgb_from_hax</option> + <option value="hax_from_rgb">hax_from_rgb</option> + <option value="rgb_from_bpx">rgb_from_bpx</option> + <option value="rgb2xyz">rgb2xyz</option> + <option value="gdx_from_rgb">gdx_from_rgb</option> + <option value="rgb_from_ahx">rgb_from_ahx</option> + <option value="lab2lch">lab2lch</option> + <option value="rgb_from_hed">rgb_from_hed</option> + <option value="bro_from_rgb">bro_from_rgb</option> + <option value="hsv2rgb">hsv2rgb</option> + </param> + </inputs> + <outputs> + <data format="tiff" name="output"/> + </outputs> + <tests> + <test> + <param name="input" value="galaxyIcon_noText.png" /> + <param name="convtype" value="rgb2hsv" /> + <output name="output" ftype="tiff" /> + </test> + </tests> + <help> + **What it does** + + This tools performs several color deconvolution techniques.</help> + <citations> + <citation type="doi">10.7717/peerj.453</citation> + <citation type="bibtex">@inproceedings{sklearn_api, + author = {Lars Buitinck and Gilles Louppe and Mathieu Blondel and + Fabian Pedregosa and Andreas Mueller and Olivier Grisel and + Vlad Niculae and Peter Prettenhofer and Alexandre Gramfort + and Jaques Grobler and Robert Layton and Jake VanderPlas and + Arnaud Joly and Brian Holt and Ga{\"{e}}l Varoquaux}, + title = {{API} design for machine learning software: experiences from the scikit-learn + project}, + booktitle = {ECML PKDD Workshop: Languages for Data Mining and Machine Learning}, + year = {2013}, + pages = {108--122}, +}</citation> + </citations> +</tool>