Mercurial > repos > imgteam > color_deconvolution
diff color_deconvolution.py @ 1:29110ca1b63a draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution/ commit b2acc1845a25828181597fe5b6982fe116a7796d
| author | imgteam |
|---|---|
| date | Mon, 22 Jul 2019 04:55:58 -0400 |
| parents | 85a9449d1dea |
| children | 387414aa6496 |
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--- a/color_deconvolution.py Sat Feb 09 14:15:00 2019 -0500 +++ b/color_deconvolution.py Mon Jul 22 04:55:58 2019 -0400 @@ -74,7 +74,7 @@ parser.add_argument('input_file', type=argparse.FileType('r'), default=sys.stdin, help='input file') parser.add_argument('out_file', type=argparse.FileType('w'), default=sys.stdin, help='out file (TIFF)') parser.add_argument('conv_type', choices=convOptions.keys(), help='conversion type') -args = parser.parse_args() +args = parser.parse_args() img_in = skimage.io.imread(args.input_file.name)[:,:,0:3] res = convOptions[args.conv_type](img_in)