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comparison yolo.xml @ 23:53a9c312fe7a draft

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author greg
date Thu, 19 Oct 2017 10:01:49 -0400
parents 87c8a4b6020d
children f191e0b8fa1d
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22:87c8a4b6020d 23:53a9c312fe7a
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 mkdir output_shape_confidence_dir && 7 mkdir output_shape_confidence_dir &&
8 mkdir input_dir && 8 mkdir input_dir &&
9 mkdir output_png_dir && 9 mkdir output_png_dir &&
10 cp -R /home/greg/_conda/envs/__darknet@1.0/bin/* . 10 cp -R /home/greg/_conda/envs/__darknet@1.0/bin/* .
11 #for $i in $input: 11 #set input $input_type_cond.input
12 #set input_filename = $i.file_name 12 #if str($input_type_cond.input_type) == 'image':
13 #set full_name = $i.name 13 #set input_filename = $input.file_name
14 #set full_name = $input.name
14 #set head = $full_name.split('.')[0] 15 #set head = $full_name.split('.')[0]
15 #set output_filename_png = '%s_predictions.png' % $head 16 #set output_filename_png = '%s_predictions.png' % $head
16 #set output_filename_shape_confidence = '%s_shape_detection_confidence.tabular' % $head 17 #set output_filename_shape_confidence = '%s_shape_detection_confidence.tabular' % $head
17 && ln -s $input_filename input_dir/$full_name 18 && ln -s $input_filename input_dir/$full_name
18 && darknet detect cfg/yolo.cfg yolo.weights 'input_dir/$full_name' -thresh $thresh > output_shape_confidence_dir/$output_filename_shape_confidence 19 && darknet detect cfg/yolo.cfg yolo.weights 'input_dir/$full_name' -thresh $thresh > output_shape_confidence_dir/$output_filename_shape_confidence
19 && mv ./predictions.png output_png_dir/$output_filename_png 20 && mv ./predictions.png output_png_dir/$output_filename_png
20 #end for 21 #else:
22 #for $i in $input:
23 #set input_filename = $i.file_name
24 #set full_name = $i.name
25 #set head = $full_name.split('.')[0]
26 #set output_filename_png = '%s_predictions.png' % $head
27 #set output_filename_shape_confidence = '%s_shape_detection_confidence.tabular' % $head
28 && ln -s $input_filename input_dir/$full_name
29 && darknet detect cfg/yolo.cfg yolo.weights 'input_dir/$full_name' -thresh $thresh > output_shape_confidence_dir/$output_filename_shape_confidence
30 && mv ./predictions.png output_png_dir/$output_filename_png
31 #end for
32 #end if
21 ]]></command> 33 ]]></command>
22 <inputs> 34 <inputs>
23 <param name="input" format="jpg" type="data_collection" collection_type="list" label="Collection of image files" /> 35 <conditional name="input_type_cond">
24 <param name="thresh" type="float" value="0.25" label="Object detection threshold" /> 36 <param name="input_type" type="select" label="Select">
37 <option value="image" selected="true">a single image</option>
38 <option value="images">a collection of images</option>
39 </param>
40 <when value="image">
41 <param name="input" format="jpg" type="data" label="Image"/>
42 </when>
43 <when value="images">
44 <param name="input" format="jpg" type="data_collection" collection_type="list" label="Collection of image files"/>
45 </when>
46 </conditional>
47 <param name="thresh" type="float" value="0.25" label="Object detection threshold"/>
25 <param name="output_shape_confidence" type="select" display="radio" label="Output shape detection confidence levels?"> 48 <param name="output_shape_confidence" type="select" display="radio" label="Output shape detection confidence levels?">
26 <option value="yes" selected="true">Yes</option> 49 <option value="yes" selected="true">Yes</option>
27 <option value="no">No</option> 50 <option value="no">No</option>
28 </param> 51 </param>
29 </inputs> 52 </inputs>
30 <outputs> 53 <outputs>
31 <collection name="output_shape_confidence" type="list" label="${tool.name} (shape detection confidence) on ${on_string}"> 54 <data name="output_shape_confidence" format="tabular" label="${tool.name} (shape detection confidence) on ${on_string}">
55 <filter>input_type_cond['input_type'] == 'image' and output_shape_confidence == 'yes'</filter>
56 </data>
57 <data name="output_shape" format="png" label="${tool.name} (shapes) on ${on_string}">
58 <filter>input_type_cond['input_type'] == 'image'</filter>
59 </data>
60 <collection name="output_shape_confidences" type="list" label="${tool.name} (shape detection confidence) on ${on_string}">
32 <discover_datasets pattern="__name__" directory="output_shape_confidence_dir" format="tabular" /> 61 <discover_datasets pattern="__name__" directory="output_shape_confidence_dir" format="tabular" />
33 <filter>output_shape_confidence == 'yes'</filter> 62 <filter>input_type_cond['input_type'] == 'images' and output_shape_confidence == 'yes'</filter>
34 </collection> 63 </collection>
35 <collection name="output_shape" type="list" label="${tool.name} (shapes) on ${on_string}"> 64 <collection name="output_shapes" type="list" label="${tool.name} (shapes) on ${on_string}">
36 <discover_datasets pattern="__name__" directory="output_png_dir" format="png" /> 65 <discover_datasets pattern="__name__" directory="output_png_dir" format="png" />
66 <filter>input_type_cond['input_type'] == 'images'</filter>
37 </collection> 67 </collection>
38 </outputs> 68 </outputs>
39 <tests> 69 <tests>
40 <test> 70 <test>
41 </test> 71 </test>