Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.py @ 4:f8488ab257ac draft

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Uploaded
author greg
date Wed, 14 Nov 2018 14:54:55 -0500
parents 017f975149b2
children 17d62e93d029
comparison
equal deleted inserted replaced
3:017f975149b2 4:f8488ab257ac
74 sample_id = items[0] 74 sample_id = items[0]
75 if len(sample_id) == 0: 75 if len(sample_id) == 0:
76 accumulated_msgs = empty_value(i, "sample_id", accumulated_msgs) 76 accumulated_msgs = empty_value(i, "sample_id", accumulated_msgs)
77 # Required and validated. 77 # Required and validated.
78 date_entered_db = items[1] 78 date_entered_db = items[1]
79 accumulated_msgs = validate_date_string(date_entered_db, accumulated_msgs) 79 accumulated_msgs = validate_date_string(i, date_entered_db, accumulated_msgs)
80 # Required. 80 # Required.
81 user_specimen_id = items[2] 81 user_specimen_id = items[2]
82 if len(user_specimen_id) == 0: 82 if len(user_specimen_id) == 0:
83 accumulated_msgs = empty_value(i, "user_specimen_id", accumulated_msgs) 83 accumulated_msgs = empty_value(i, "user_specimen_id", accumulated_msgs)
84 # Optional. 84 # Optional.
135 org = items[24] 135 org = items[24]
136 if len(org) == 0: 136 if len(org) == 0:
137 accumulated_msgs = empty_value(i, "org", accumulated_msgs) 137 accumulated_msgs = empty_value(i, "org", accumulated_msgs)
138 # Required and validated. 138 # Required and validated.
139 collection_date = items[25] 139 collection_date = items[25]
140 accumulated_msgs = validate_date_string(date_entered_db, accumulated_msgs) 140 accumulated_msgs = validate_date_string(i, date_entered_db, accumulated_msgs)
141 # Required and validated. 141 # Required and validated.
142 contact_email = items[26] 142 contact_email = items[26]
143 accumulated_msgs = validate_email(contact_email, accumulated_msgs) 143 accumulated_msgs = validate_email(contact_email, accumulated_msgs)
144 # Required. 144 # Required.
145 seq_facility = items[27] 145 seq_facility = items[27]