Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.py @ 2:f3ca1cd544fa draft

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author greg
date Wed, 14 Nov 2018 14:51:26 -0500
parents 613186952d42
children 017f975149b2
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1:613186952d42 2:f3ca1cd544fa
67 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 96 data lines.") 67 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 96 data lines.")
68 stop_error(accumulated_msgs) 68 stop_error(accumulated_msgs)
69 items = line.split("\t") 69 items = line.split("\t")
70 if len(items) != 31: 70 if len(items) != 31:
71 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 31)." % (i, len(items))) 71 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 31)." % (i, len(items)))
72 stop_error() 72 stop_error(accumulated_msgs)
73 # Required. 73 # Required.
74 sample_id = items[0] 74 sample_id = items[0]
75 if len(sample_id) == 0: 75 if len(sample_id) == 0:
76 accumulated_msgs = empty_value(i, "sample_id", accumulated_msgs) 76 accumulated_msgs = empty_value(i, "sample_id", accumulated_msgs)
77 # Required and validated. 77 # Required and validated.