Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.xml @ 16:b5bbc8f1f225 draft

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author greg
date Mon, 19 Nov 2018 13:43:29 -0500
parents df9d19f771ae
children 17db886fbfad
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15:df9d19f771ae 16:b5bbc8f1f225
17 <param name="input" value="affy_metadata.csv" ftype="csv"/> 17 <param name="input" value="affy_metadata.csv" ftype="csv"/>
18 <output name="output" file="affy_metadata.csv" ftype="csv"/> 18 <output name="output" file="affy_metadata.csv" ftype="csv"/>
19 </test> 19 </test>
20 </tests> 20 </tests>
21 <help> 21 <help>
22
23 -----
24
25 **What it does** 22 **What it does**
26 23
27 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 29 columns and no more than 96 data lines. 24 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 29 columns and no more than 96 data lines.
28 The tool will output the input file if it is valid. 25 The tool will output the input file if it is valid.
29 26
30 ----- 27 -----
31 28
32 **Columns** 29 **Columns**
33 30
34 date_entered_db 31 * date_entered_db
35 user_specimen_id 32 * user_specimen_id
36 field_call 33 * field_call
37 bcoral_genet_id 34 * bcoral_genet_id
38 bsym_genet_id 35 * bsym_genet_id
39 reef 36 * reef
40 region 37 * region
41 latitude 38 * latitude
42 longitude 39 * longitude
43 geographic_origin 40 * geographic_origin
44 sample_location 41 * sample_location
45 latitude_outplant 42 * latitude_outplant
46 longitude_outplant 43 * longitude_outplant
47 depth 44 * depth
48 dist_shore 45 * dist_shore
49 disease_resist 46 * disease_resist
50 bleach_resist 47 * bleach_resist
51 mortality 48 * mortality
52 tle 49 * tle
53 spawning 50 * spawning
54 collector_last_name 51 * collector_last_name
55 collector_first_name 52 * collector_first_name
56 org 53 * org
57 collection_date 54 * collection_date
58 contact_email 55 * contact_email
59 seq_facility 56 * seq_facility
60 array_version 57 * array_version
61 public 58 * public
62 public_after_date 59 * public_after_date
63 </help> 60 </help>
64 <citations> 61 <citations>
65 </citations> 62 </citations>
66 </tool> 63 </tool>