Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.py @ 12:977280cfef63 draft

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Uploaded
author greg
date Thu, 15 Nov 2018 10:24:37 -0500
parents 96fbb0504ac9
children 73a0f0ba30d4
comparison
equal deleted inserted replaced
11:96fbb0504ac9 12:977280cfef63
127 # Optional. 127 # Optional.
128 tle = items[18] 128 tle = items[18]
129 # Optional. 129 # Optional.
130 spawning = string_as_boolean_string(items[19]) 130 spawning = string_as_boolean_string(items[19])
131 # Required. 131 # Required.
132 collector_last_name = items[21] 132 collector_last_name = items[20]
133 if len(collector_last_name) == 0: 133 if len(collector_last_name) == 0:
134 accumulated_msgs = empty_value(i, "collector_last_name", accumulated_msgs) 134 accumulated_msgs = empty_value(i, "collector_last_name", accumulated_msgs)
135 # Required. 135 # Required.
136 collector_first_name = items[22] 136 collector_first_name = items[21]
137 if len(collector_first_name) == 0: 137 if len(collector_first_name) == 0:
138 accumulated_msgs = empty_value(i, "collector_first_name", accumulated_msgs) 138 accumulated_msgs = empty_value(i, "collector_first_name", accumulated_msgs)
139 # Required. 139 # Required.
140 org = items[23] 140 org = items[22]
141 if len(org) == 0: 141 if len(org) == 0:
142 accumulated_msgs = empty_value(i, "org", accumulated_msgs) 142 accumulated_msgs = empty_value(i, "org", accumulated_msgs)
143 # Required and validated. 143 # Required and validated.
144 collection_date = items[24] 144 collection_date = items[23]
145 accumulated_msgs = validate_date_string(i, date_entered_db, accumulated_msgs) 145 accumulated_msgs = validate_date_string(i, date_entered_db, accumulated_msgs)
146 # Required and validated. 146 # Required and validated.
147 contact_email = items[25] 147 contact_email = items[24]
148 accumulated_msgs = validate_email(i, contact_email, accumulated_msgs) 148 accumulated_msgs = validate_email(i, contact_email, accumulated_msgs)
149 # Required. 149 # Required.
150 seq_facility = items[26] 150 seq_facility = items[25]
151 if len(seq_facility) == 0: 151 if len(seq_facility) == 0:
152 accumulated_msgs = empty_value(i, "seq_facility", accumulated_msgs) 152 accumulated_msgs = empty_value(i, "seq_facility", accumulated_msgs)
153 # Optional. 153 # Optional.
154 array_version = items[27] 154 array_version = items[26]
155 # Optional. 155 # Optional.
156 public = string_as_boolean_string(items[28]) 156 public = string_as_boolean_string(items[27])
157 # Optional. 157 # Optional.
158 public_after_date = items[29] 158 public_after_date = items[28]
159 accumulated_msga = validate_date_string(public_after_date) 159 accumulated_msga = validate_date_string(public_after_date)
160 160
161 if len(accumulated_msgs) > 0: 161 if len(accumulated_msgs) > 0:
162 stop_error(accumulated_msgs) 162 stop_error(accumulated_msgs)
163 163