Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.xml @ 23:84478b80cc47 draft

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Uploaded
author greg
date Fri, 15 Feb 2019 08:57:22 -0500
parents 90688364136c
children 8a826d1afe69
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22:e5f68d7f238e 23:84478b80cc47
4 python '$__tool_directory__/validate_affy_metadata.py' 4 python '$__tool_directory__/validate_affy_metadata.py'
5 --input '$input' 5 --input '$input'
6 --output '$output']]></command> 6 --output '$output']]></command>
7 <inputs> 7 <inputs>
8 <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file"> 8 <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file">
9 <validator type="expression" message="96 well plate data must have 30 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==30 and value.metadata.data_lines<=96]]></validator> 9 <validator type="expression" message="96 well plate data must have 32 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==32 and value.metadata.data_lines<=96]]></validator>
10 </param> 10 </param>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data name="output" format="tabular"/> 13 <data name="output" format="tabular"/>
14 </outputs> 14 </outputs>
19 </test> 19 </test>
20 </tests> 20 </tests>
21 <help> 21 <help>
22 **What it does** 22 **What it does**
23 23
24 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 30 columns and no more than 96 data lines. 24 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 32 columns and no more than 96 data lines.
25 The tool will output the input file if it is valid. 25 The tool will output the input file if it is valid.
26 26
27 ----- 27 -----
28 28
29 **Columns** 29 **Columns**
56 * array_version 56 * array_version
57 * public 57 * public
58 * public_after_date 58 * public_after_date
59 * sperm_motility 59 * sperm_motility
60 * healing_time 60 * healing_time
61 * dna_extraction_method
62 * dna_concentration
61 </help> 63 </help>
62 <citations> 64 <citations>
63 </citations> 65 </citations>
64 </tool> 66 </tool>
65 67