Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.xml @ 18:38166b76f47a draft

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author greg
date Tue, 22 Jan 2019 11:05:08 -0500
parents 17db886fbfad
children 2df07ae9af2d
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17:17db886fbfad 18:38166b76f47a
4 python '$__tool_directory__/validate_affy_metadata.py' 4 python '$__tool_directory__/validate_affy_metadata.py'
5 --input '$input' 5 --input '$input'
6 --output '$output']]></command> 6 --output '$output']]></command>
7 <inputs> 7 <inputs>
8 <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file"> 8 <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file">
9 <validator type="expression" message="96 well plate data must have 29 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==29 and value.metadata.data_lines<=96]]></validator> 9 <validator type="expression" message="96 well plate data must have 28 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==28 and value.metadata.data_lines<=96]]></validator>
10 </param> 10 </param>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data name="output" format="tabular"/> 13 <data name="output" format="tabular"/>
14 </outputs> 14 </outputs>
19 </test> 19 </test>
20 </tests> 20 </tests>
21 <help> 21 <help>
22 **What it does** 22 **What it does**
23 23
24 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 29 columns and no more than 96 data lines. 24 Validates an Affymetrix metadata file for 96 well plate data. These files consist of 28 columns and no more than 96 data lines.
25 The tool will output the input file if it is valid. 25 The tool will output the input file if it is valid.
26 26
27 ----- 27 -----
28 28
29 **Columns** 29 **Columns**