Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.xml @ 17:17db886fbfad draft

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author greg
date Tue, 04 Dec 2018 13:51:21 -0500
parents b5bbc8f1f225
children 38166b76f47a
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16:b5bbc8f1f225 17:17db886fbfad
3 <command detect_errors="exit_code"><![CDATA[ 3 <command detect_errors="exit_code"><![CDATA[
4 python '$__tool_directory__/validate_affy_metadata.py' 4 python '$__tool_directory__/validate_affy_metadata.py'
5 --input '$input' 5 --input '$input'
6 --output '$output']]></command> 6 --output '$output']]></command>
7 <inputs> 7 <inputs>
8 <param name="input" type="data" format="csv" label="Affymetrix 96 well plate metadata file"> 8 <param name="input" type="data" format="tabular" label="Affymetrix 96 well plate metadata file">
9 <validator type="expression" message="96 well plate data must have 29 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==29 and value.metadata.data_lines<=96]]></validator> 9 <validator type="expression" message="96 well plate data must have 29 columns and no more than 96 lines of data"><![CDATA[value is not None and value.metadata.columns==29 and value.metadata.data_lines<=96]]></validator>
10 </param> 10 </param>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data name="output" format="csv"/> 13 <data name="output" format="tabular"/>
14 </outputs> 14 </outputs>
15 <tests> 15 <tests>
16 <test> 16 <test>
17 <param name="input" value="affy_metadata.csv" ftype="csv"/> 17 <param name="input" value="affy_metadata.tabular" ftype="tabular"/>
18 <output name="output" file="affy_metadata.csv" ftype="csv"/> 18 <output name="output" file="affy_metadata.tabular" ftype="tabular"/>
19 </test> 19 </test>
20 </tests> 20 </tests>
21 <help> 21 <help>
22 **What it does** 22 **What it does**
23 23
59 * public_after_date 59 * public_after_date
60 </help> 60 </help>
61 <citations> 61 <citations>
62 </citations> 62 </citations>
63 </tool> 63 </tool>
64