Mercurial > repos > greg > validate_affy_metadata

comparison validate_affy_metadata.py @ 3:017f975149b2 draft

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author greg
date Wed, 14 Nov 2018 14:53:02 -0500
parents f3ca1cd544fa
children f8488ab257ac
comparison
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2:f3ca1cd544fa 3:017f975149b2
64 continue 64 continue
65 line = line.rstrip("\r\n") 65 line = line.rstrip("\r\n")
66 if i > 97: 66 if i > 97:
67 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 96 data lines.") 67 accumulated_msgs = add_error_msg(accumulated_msgs, "The input file contains more than 96 data lines.")
68 stop_error(accumulated_msgs) 68 stop_error(accumulated_msgs)
69 items = line.split("\t") 69 items = line.split(",")
70 if len(items) != 31: 70 if len(items) != 31:
71 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 31)." % (i, len(items))) 71 accumulated_msgs = add_error_msg(accumulated_msgs, "Line %d contains %s columns, (must be 31)." % (i, len(items)))
72 stop_error(accumulated_msgs) 72 stop_error(accumulated_msgs)
73 # Required. 73 # Required.
74 sample_id = items[0] 74 sample_id = items[0]