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annotate snpEff_2_1a/scripts/snpEff.sh @ 0:f8eaa3f8194b default tip

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Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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1 #!/bin/sh
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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2
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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3 DIR=$HOME/snpEff/
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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4 LIB=$HOME/snpEff/lib
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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5
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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6 java -Xmx1G \
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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7 -classpath "$LIB/charts4j-1.2.jar:$LIB/flanagan.jar:$LIB/freemarker.jar:$LIB/junit.jar:$LIB/trove-3.0.2.jar:$LIB/akka-actor-2.0-M4.jar:$LIB/scala-library.jar:$DIR" \
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
greg
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8 ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff \
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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9 $*