Mercurial > repos > greg > snpeff_v2_from_pablo

annotate snpEff_2_1a/scripts/buildTestCases.sh @ 0:f8eaa3f8194b default tip

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Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
author greg
date Fri, 20 Apr 2012 14:47:09 -0400
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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1 #!/bin/sh
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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3 # Test cases hg37
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4 ./scripts/snpEffM.sh build -v -txt testCase
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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6 # Test cases hg37.61
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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7 ./scripts/snpEffM.sh build -v -gtf22 testHg3761Chr15
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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8 ./scripts/snpEffM.sh build -v -gtf22 testHg3761Chr16
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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10 # Test cases hg37.63
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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11 ./scripts/snpEffM.sh build -v -gtf22 testHg3763Chr1
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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12 ./scripts/snpEffM.sh build -v -gtf22 testHg3763Chr20
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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13 ./scripts/snpEffM.sh build -v -gtf22 testHg3763ChrY
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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15 # Test cases hg37.65
f8eaa3f8194b Uploaded snpEff_v2_1a_core.tgz from Pablo Cingolani
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16 ./scripts/snpEffM.sh build -v -gtf22 testHg3765Chr22