Mercurial > repos > greg > r_hello_world
comparison bmsb.xml @ 10:a00ffd13739c draft
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| author | greg |
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| date | Tue, 16 Aug 2016 09:51:48 -0400 |
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| 9:da9203d74d1d | 10:a00ffd13739c |
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| 1 <?xml version="."?> | |
| 2 <tool id="bmsb_model" name="Brown Marmorated Stink Bug" version="1.0.0"> | |
| 3 <description>model</description> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="3.3.1">r-base</requirement> | |
| 6 <requirement type="package" version="1.3.0">r-optparse</requirement> | |
| 7 </requirements> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 Rscript $__tool_directory__/bmsb.R | |
| 11 #if str($output_r_logging_cond.output_r_logging) == "yes": | |
| 12 -s "true" | |
| 13 -m "$output_r_log" | |
| 14 #end if | |
| 15 -o "$output" | |
| 16 ]]> | |
| 17 </command> | |
| 18 <inputs> | |
| 19 <param name="input" type="data" format="csv" label="Select temperature data" /> | |
| 20 <conditional name="output_r_logging_cond"> | |
| 21 <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages."> | |
| 22 <option value="yes" selected="True">Yes</option> | |
| 23 <option value="no">No</option> | |
| 24 </param> | |
| 25 <when value="no"/> | |
| 26 <when value="yes"/> | |
| 27 </conditional> | |
| 28 </inputs> | |
| 29 <outputs> | |
| 30 <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log"> | |
| 31 <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter> | |
| 32 </data> | |
| 33 <data name="output" format="RData"/> | |
| 34 </outputs> | |
| 35 <help> | |
| 36 **What it does** | |
| 37 | |
| 38 BMSB prototype tool. | |
| 39 </help> | |
| 40 <citations> | |
| 41 <citation></citation> | |
| 42 </citations> | |
| 43 </tool> |