<tool id="plant_tribes_gene_family_scaffold_loader" name="Load scaffold" version="@WRAPPER_VERSION@.0.0">
    <description>into Galaxy PlantTribes database</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/gene_family_scaffold_loader.py'
--database_connection_string '$__app__.config.plant_tribes_database_connection'
--output '$output'
--scaffold_path '$GALAXY_DATA_INDEX_DIR/plant_tribes/scaffolds/$scaffold'
--output '$output']]></command>
    <inputs>
        <expand macro="param_scaffold" />
    </inputs>
    <outputs>
        <data name="output" format="txt"/>
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>
This tool is one of the PlantTribes collection of automated modular analysis pipelines for comparative and evolutionary
analyses of genome-scale gene families and transcriptomes. This tool analyzes a scaffold installed by the Data Manager
for installing PlantTribes scaffolds into Galaxy and inserts information about them into the Galaxy PlantTribes database
for querying and additional analysis.

-----

**Required options**

 * **Gene family scaffold** - one of the PlantTribes gene family scaffolds, installed into Galaxy by the PlantTribes Scaffold Data Manager tool, that has not yet been analyzed and loaded into the Galaxy PlantTribes database.
    </help>
    <citations>
        <citation type="bibtex">
            @unpublished{None,
            author = {Greg Von Kuster,Eric Wafula},
            title = {None},
            year = {None},
            eprint = {None},
            url = {https://github.com/dePamphilis/PlantTribes}}
        </citation>
    </citations>
</tool>