Mercurial > repos > greg > plant_tribes_gene_family_scaffold_loader
diff gene_family_scaffold_loader.py @ 8:3841f7252b1d draft
Uploaded
author | greg |
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date | Tue, 21 Aug 2018 12:54:31 -0400 |
parents | 9a4b0ae3d408 |
children | 11a36e425c94 |
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--- a/gene_family_scaffold_loader.py Fri Jun 08 13:07:42 2018 -0400 +++ b/gene_family_scaffold_loader.py Tue Aug 21 12:54:31 2018 -0400 @@ -242,9 +242,8 @@ species_name = items[0] i = 0 for clustering_method in self.clustering_methods: + # The format of species_genes_dict_key is <clustering_method>^^<species_name>. species_genes_dict_key = "%s^^%s" % (clustering_method, species_name) - # The format of species_genes_dict_key is <clustering_method>^^<species_name>. - species_genes_dict_key_items = species_genes_dict_key.split("^^") # Get the scaffold_rec for the current scaffold_id and clustering_method. # The list is [<scaffold_id_db>, <scaffold_id>, <clustering_method>] for scaffold_rec in self.scaffold_recs: @@ -389,6 +388,7 @@ self.log("Inserted a total of %d rows into the plant_tribes_gene table." % gi) self.log("Inserted a total of %d rows into the gene_scaffold_orthogroup_taxon_association table." % gsoai) + if __name__ == '__main__': scaffold_loader = ScaffoldLoader() scaffold_loader.run()