Mercurial > repos > greg > plant_tribes_gene_family_scaffold_loader

comparison gene_family_scaffold_loader.py @ 14:4c88c8d793e8 draft default tip

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author greg
date Thu, 18 Oct 2018 11:02:18 -0400
parents 6f1f5f242503
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13:6f1f5f242503 14:4c88c8d793e8
11 11
12 import psycopg2 12 import psycopg2
13 from sqlalchemy import create_engine, MetaData, Table 13 from sqlalchemy import create_engine, MetaData, Table
14 from sqlalchemy.engine.url import make_url 14 from sqlalchemy.engine.url import make_url
15 15
16 BLACKLIST_STRINGS = [['NULL', 16 BLACKLIST_STRINGS = ['NULL',
17 'Unknown protein', 17 'Unknown protein',
18 'No TAIR description', 18 'No TAIR description',
19 'Representative annotation below 0' 19 'Representative annotation below 0'
20 'Representative AHRD below 0'] 20 'Representative AHRD below 0']
21 21