Mercurial > repos > greg > plant_tribes_add_scaffold
diff add_scaffold.xml @ 0:fdcced0f4ae4 draft
Uploaded
author | greg |
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date | Tue, 22 May 2018 09:40:43 -0400 |
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children | c6a05684ed31 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/add_scaffold.xml Tue May 22 09:40:43 2018 -0400 @@ -0,0 +1,40 @@ +<tool id="plant_tribes_add_scaffold" name="Add scaffold" version="@WRAPPER_VERSION@.0.0"> + <description>to Galaxy PlantTribes database</description> + <macros> + <import>macros.xml</import> + </macros> + <command detect_errors="exit_code"><![CDATA[ +python add_scaffold.py +--database_connection_string '$__app,config.plant_tribes_database_connection' +--output '$output' +--scaffold_path '$GALAXY_DATA_INDEX_DIR/plant_tribes/scaffolds/$scaffold' +--output '$output']]></command> + <inputs> + <expand macro="param_scaffold" /> + </inputs> + <outputs> + <data name="output" format="txt"/> + </outputs> + <tests> + <test> + </test> + </tests> + <help> + +----- + +**Required options** + + * **Gene family scaffold** - one of the PlantTribes gene family scaffolds, installed into Galaxy by the PlantTribes Scaffold Data Manager tool, that has not yet been added to the Galaxy PlantTribes database. + </help> + <citations> + <citation type="bibtex"> + @unpublished{None, + author = {Greg Von Kuster,Eric Wafula}, + title = {None}, + year = {None}, + eprint = {None}, + url = {https://github.com/dePamphilis/PlantTribes}} + </citation> + </citations> +</tool>