Mercurial > repos > greg > plant_tribes_add_scaffold

comparison add_scaffold.py @ 5:f2e91be20b43 draft

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Uploaded
author greg
date Tue, 22 May 2018 10:06:28 -0400
parents fa0822e74ed3
children 7973201f23e7
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4:fa0822e74ed3 5:f2e91be20b43
33 parser.add_argument('--database_connection_string', dest='database_connection_string', help='Postgres database connection string'), 33 parser.add_argument('--database_connection_string', dest='database_connection_string', help='Postgres database connection string'),
34 parser.add_argument('--output', dest='output', help='Output dataset'), 34 parser.add_argument('--output', dest='output', help='Output dataset'),
35 parser.add_argument('--scaffold_path', dest='scaffold_path', help='Full path to PlantTribes scaffold directory') 35 parser.add_argument('--scaffold_path', dest='scaffold_path', help='Full path to PlantTribes scaffold directory')
36 self.args = parser.parse_args() 36 self.args = parser.parse_args()
37 37
38 def stop_err(msg): 38 def stop_err(self, msg):
39 sys.stderr.write(msg) 39 sys.stderr.write(msg)
40 self.fh.flush() 40 self.fh.flush()
41 self.fh.close() 41 self.fh.close()
42 sys.exit(1) 42 sys.exit(1)
43 43