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comparison phylogenomics_analysis.xml @ 30:ec58d25386fc draft

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Uploaded
author greg
date Wed, 11 Jan 2017 11:05:40 -0500
parents 7d0cc822c94e
children 40a1cb4c8426
comparison
equal deleted inserted replaced
29:7d0cc822c94e 30:ec58d25386fc
75 #set input_includes_coding_sequences_cond = $options_type.multiple_sequence_alignments_cond.input_includes_coding_sequences_cond 75 #set input_includes_coding_sequences_cond = $options_type.multiple_sequence_alignments_cond.input_includes_coding_sequences_cond
76 #set input_includes_coding_sequences = $input_includes_coding_sequences_cond.input_includes_coding_sequences 76 #set input_includes_coding_sequences = $input_includes_coding_sequences_cond.input_includes_coding_sequences
77 #if str($input_includes_coding_sequences) == 'yes': 77 #if str($input_includes_coding_sequences) == 'yes':
78 #set multiple_codon_alignments_cond = $input_includes_coding_sequences_cond.multiple_codon_alignments_cond 78 #set multiple_codon_alignments_cond = $input_includes_coding_sequences_cond.multiple_codon_alignments_cond
79 #set multiple_codon_alignments = $multiple_codon_alignments_cond.multiple_codon_alignments 79 #set multiple_codon_alignments = $multiple_codon_alignments_cond.multiple_codon_alignments
80 #set use_corresponding_coding_sequences_cond = $multiple_codon_alignments_cond.use_corresponding_coding_sequences_cond 80 #if str($input_includes_coding_sequences) == 'yes':
81 #set use_corresponding_coding_sequences = $use_corresponding_coding_sequences_cond.use_corresponding_coding_sequences 81 #set use_corresponding_coding_sequences_cond = $multiple_codon_alignments_cond.use_corresponding_coding_sequences_cond
82 #set use_corresponding_coding_sequences = $use_corresponding_coding_sequences_cond.use_corresponding_coding_sequences
83 #else:
84 #set use_corresponding_coding_sequences = 'no'
85 #end if
86 #else:
87 #set multiple_codon_alignments = 'no'
88 #set use_corresponding_coding_sequences = 'no'
82 #end if 89 #end if
83 90
84 #if str($multiple_sequence_alignments_option) == 'create_alignments': 91 #if str($multiple_sequence_alignments_option) == 'create_alignments':
85 --create_alignments 92 --create_alignments
86 #else if str($multiple_sequence_alignments_option) == 'add_alignments': 93 #else if str($multiple_sequence_alignments_option) == 'add_alignments':