Mercurial > repos > greg > phylogenomics_analysis

comparison phylogenomics_analysis.xml @ 52:ebc846754dcb draft

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Uploaded
author greg
date Fri, 10 Feb 2017 09:28:28 -0500
parents 32c3bf33cad7
children c24ca7fed70c
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51:32c3bf33cad7 52:ebc846754dcb
71 --num_threads \${GALAXY_SLOTS:-4} 71 --num_threads \${GALAXY_SLOTS:-4}
72 #if str($input_format) == 'ptortho': 72 #if str($input_format) == 'ptortho':
73 --orthogroup_faa '$input_format_cond.input_ptortho.extra_files_path' 73 --orthogroup_faa '$input_format_cond.input_ptortho.extra_files_path'
74 #else: 74 #else:
75 --orthogroup_faa '$input_format_cond.input_ptorthocs.extra_files_path' 75 --orthogroup_faa '$input_format_cond.input_ptorthocs.extra_files_path'
76 --orthogroup_fna
76 #end if 77 #end if
77 --scaffold_dir '$scaffold_dir' 78 --scaffold_dir '$scaffold_dir'
78 --scaffold '$scaffold_selection' 79 --scaffold '$scaffold_selection'
79 --method $method 80 --method $method
80 81