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comparison phylogenomics_analysis.xml @ 105:e0fa1e2105f6 draft

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author greg
date Mon, 27 Mar 2017 11:20:26 -0400
parents 5a5f380bbf48
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104:4d78ec10c07e 105:e0fa1e2105f6
101 --output_ptortho_dir '$output_ptortho.files_path' 101 --output_ptortho_dir '$output_ptortho.files_path'
102 #else: 102 #else:
103 --output_ptorthocs '$output_ptorthocs' 103 --output_ptorthocs '$output_ptorthocs'
104 --output_ptorthocs_dir '$output_ptorthocs.files_path' 104 --output_ptorthocs_dir '$output_ptorthocs.files_path'
105 #end if 105 #end if
106 106 @OUTPUT_ALN@
107 #if str($multiple_sequence_alignments) == 'yes' 107 @OUTPUT_TREE@
108 --output_aln '$output_aln'
109 --output_aln_dir '$output_aln.files_path'
110 #end if
111
112 #if str($phylogenetic_trees) == 'yes':
113 --output_tree '$output_tree'
114 --output_tree_dir '$output_tree.files_path'
115 #end if
116 ]]> 108 ]]>
117 </command> 109 </command>
118 <inputs> 110 <inputs>
119 <conditional name="input_format_cond"> 111 <conditional name="input_format_cond">
120 <param name="input_format" type="select" label="Select type of data to sub sample"> 112 <param name="input_format" type="select" label="Select type of data to sub sample">