Mercurial > repos > greg > phylogenomics_analysis

comparison phylogenomics_analysis.xml @ 33:d8e7ac110e1b draft

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Uploaded
author greg
date Thu, 12 Jan 2017 09:42:38 -0500
parents c2ec4bb1fd5f
children 01c89742cb39
comparison
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32:c2ec4bb1fd5f 33:d8e7ac110e1b
92 #if str($multiple_sequence_alignments_option) == 'create_alignments': 92 #if str($multiple_sequence_alignments_option) == 'create_alignments':
93 --create_alignments 93 --create_alignments
94 #else if str($multiple_sequence_alignments_option) == 'add_alignments': 94 #else if str($multiple_sequence_alignments_option) == 'add_alignments':
95 --add_alignments 95 --add_alignments
96 #else if str($multiple_sequence_alignments_option) == 'pasta_alignments': 96 #else if str($multiple_sequence_alignments_option) == 'pasta_alignments':
97 --pasta_script_path "$__tool_directory__/run_pasta.py"
97 --pasta_alignments 98 --pasta_alignments
98 --pasta_iter_limit $multiple_sequence_alignments_option_cond.pasta_iter_limit 99 --pasta_iter_limit $multiple_sequence_alignments_option_cond.pasta_iter_limit
99 #end if 100 #end if
100 101
101 #if str($input_includes_coding_sequences) == 'yes': 102 #if str($input_includes_coding_sequences) == 'yes':