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comparison phylogenomics_analysis.xml @ 57:c662ff5166df draft

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Uploaded
author greg
date Fri, 10 Feb 2017 14:08:42 -0500
parents ae197e9e9497
children 1b256588fb06
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56:ae197e9e9497 57:c662ff5166df
100 #set rooting_order_file_cond = $tree_inference_cond.rooting_order_file_cond 100 #set rooting_order_file_cond = $tree_inference_cond.rooting_order_file_cond
101 #set rooting_order_file = $rooting_order_file_cond.rooting_order_file 101 #set rooting_order_file = $rooting_order_file_cond.rooting_order_file
102 #if str($rooting_order_file) == 'yes': 102 #if str($rooting_order_file) == 'yes':
103 --rooting_order '$rooting_order_file_cond.rooting_order' 103 --rooting_order '$rooting_order_file_cond.rooting_order'
104 #else: 104 #else:
105 #set default_rooting_order = $__tool_directory__/rooting_order.config 105 #set default_rooting_order = $os.path.join($__tool_directory__, 'rooting_order.config')
106 --rooting_order '$default_rooting_order' 106 --rooting_order '$default_rooting_order'
107 #end if 107 #end if
108 --bootstrap_replicates $tree_inference_cond.bootstrap_replicates 108 --bootstrap_replicates $tree_inference_cond.bootstrap_replicates
109 #end if 109 #end if
110 --max_orthogroup_size $options_type.phylogenetic_trees_cond.max_orthogroup_size 110 --max_orthogroup_size $options_type.phylogenetic_trees_cond.max_orthogroup_size