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comparison phylogenomics_analysis.xml @ 36:c42769258e0d draft

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author greg
date Thu, 12 Jan 2017 10:03:58 -0500
parents 01c89742cb39
children 79c8d886e43b
comparison
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35:01c89742cb39 36:c42769258e0d
147 && echo "Sequence alignments and corresponding phylogenies: `ls $src_fasta_dir | grep f | wc -l` files" > $output_fasta 147 && echo "Sequence alignments and corresponding phylogenies: `ls $src_fasta_dir | grep f | wc -l` files" > $output_fasta
148 && ls -al $src_fasta_dir | grep f >> $output_fasta 148 && ls -al $src_fasta_dir | grep f >> $output_fasta
149 && mv $src_fasta_dir/* $dest_fasta_dir 149 && mv $src_fasta_dir/* $dest_fasta_dir
150 150
151 #if $generate_output_aln: 151 #if $generate_output_aln:
152 && echo "Multiple sequence alignments using method '$multiple_sequence_alignments_option': `ls $src_aln_dir | grep f | wc -l` files" > $output_aln 152 && echo "Multiple sequence alignments using method '$multiple_sequence_alignments_option' (note that some files may be empty): `ls $src_aln_dir | grep f | wc -l` files" > $output_aln
153 && ls -al $src_aln_dir | grep f >> $output_aln 153 && ls -al $src_aln_dir | grep f >> $output_aln
154 && mv $src_aln_dir/* $dest_aln_dir 154 && mv $src_aln_dir/* $dest_aln_dir
155 #end if 155 #end if
156 156
157 #if $generate_output_tree: 157 #if $generate_output_tree: