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comparison phylogenomics_analysis.xml @ 45:c27c13bb4615 draft

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author greg
date Fri, 03 Feb 2017 13:48:18 -0500
parents 3592048fb258
children 801f467f6555
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44:3592048fb258 45:c27c13bb4615
26 #set src_tree_dir = $os.path.join($pipeline_output_dir, 'orthogroups_tree') 26 #set src_tree_dir = $os.path.join($pipeline_output_dir, 'orthogroups_tree')
27 27
28 #if str($input_format) == 'ptcgf': 28 #if str($input_format) == 'ptcgf':
29 #set dest_fasta_dir = $output_fasta_ptcgf.extra_files_path 29 #set dest_fasta_dir = $output_fasta_ptcgf.extra_files_path
30 #set multiple_codon_alignments = 'no' 30 #set multiple_codon_alignments = 'no'
31 #set use_corresponding_coding_sequences = 'no 31 #set use_corresponding_coding_sequences = 'no'
32 #else: 32 #else:
33 #set dest_fasta_dir = $output_fasta_ptcgfcs.extra_files_path 33 #set dest_fasta_dir = $output_fasta_ptcgfcs.extra_files_path
34 #set multiple_codon_alignments_cond = $input_format_cond.multiple_codon_alignments_cond 34 #set multiple_codon_alignments_cond = $input_format_cond.multiple_codon_alignments_cond
35 #set multiple_codon_alignments = $multiple_codon_alignments_cond.multiple_codon_alignments 35 #set multiple_codon_alignments = $multiple_codon_alignments_cond.multiple_codon_alignments
36 #if str($multiple_codon_alignments) == 'yes': 36 #if str($multiple_codon_alignments) == 'yes':