Mercurial > repos > greg > phylogenomics_analysis

comparison phylogenomics_analysis.xml @ 1:b1e7de636060 draft

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author greg
date Wed, 04 Jan 2017 08:24:13 -0500
parents 30c4554064f9
children 56ff8d706414
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0:30c4554064f9 1:b1e7de636060
11 <regex match="Exception:" /> 11 <regex match="Exception:" />
12 </stdio> 12 </stdio>
13 <command> 13 <command>
14 <![CDATA[ 14 <![CDATA[
15 PhylogenomicsAnalysis 15 PhylogenomicsAnalysis
16 ----orthogroup_faa "$orthogroup_fna.extra_files_path" 16 --orthogroup_faa "$orthogroup_fna.extra_files_path"
17 --scaffold "$scaffold" 17 --scaffold "$scaffold"
18 --method $method 18 --method $method
19 #if str($options_type.options_type_selector) == 'advanced': 19 #if str($options_type.options_type_selector) == 'advanced':
20 #if str($options_type.multiple_sequence_alignments_cond) == 'yes': 20 #if str($options_type.multiple_sequence_alignments_cond) == 'yes':
21 #set multiple_codon_alignments_cond = $options_type.multiple_sequence_alignments_cond.multiple_codon_alignments_cond 21 #set multiple_codon_alignments_cond = $options_type.multiple_sequence_alignments_cond.multiple_codon_alignments_cond