Mercurial > repos > greg > phylogenomics_analysis

comparison phylogenomics_analysis.xml @ 47:898270c680a9 draft

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author greg
date Fri, 03 Feb 2017 13:54:54 -0500
parents 801f467f6555
children 4cde2d993ce5
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46:801f467f6555 47:898270c680a9
64 #set generate_output_tree = False 64 #set generate_output_tree = False
65 #end if 65 #end if
66 66
67 PhylogenomicsAnalysis 67 PhylogenomicsAnalysis
68 --num_threads \${GALAXY_SLOTS:-4} 68 --num_threads \${GALAXY_SLOTS:-4}
69 --orthogroup_faa '$input.extra_files_path' 69 #if str($input_format) == 'ptcgf':
70 --orthogroup_faa '$input_format_cond.input_ptcgf.extra_files_path'
71 #else:
72 --orthogroup_faa '$input_format_cond.input_ptcgfcs.extra_files_path'
73 #end if
70 --scaffold_dir '$scaffold_dir' 74 --scaffold_dir '$scaffold_dir'
71 --scaffold '$scaffold_selection' 75 --scaffold '$scaffold_selection'
72 --method $method 76 --method $method
73 77
74 #if str($options_type.options_type_selector) == 'advanced': 78 #if str($options_type.options_type_selector) == 'advanced':