Mercurial > repos > greg > phylogenomics_analysis

comparison macros.xml @ 107:7e8be10d7957 draft

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Uploaded
author greg
date Mon, 27 Mar 2017 14:39:30 -0400
parents 5e5db789406a
children 1b0ed448cdb0
comparison
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106:5e5db789406a 107:7e8be10d7957
128 #end if 128 #end if
129 --min_orthogroup_size $min_orthogroup_size 129 --min_orthogroup_size $min_orthogroup_size
130 --max_orthogroup_size $max_orthogroup_size 130 --max_orthogroup_size $max_orthogroup_size
131 </token> 131 </token>
132 <token name="@OUTPUT_ALN@"> 132 <token name="@OUTPUT_ALN@">
133 #if str($input_format_cond['options_type_cond']['options_type']) == 'advanced' and ((str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_gappy_sequences']) == 'yes' and str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes') or (str($input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes') and str($input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes')): 133 #if str($input_format_cond['options_type_cond']['options_type']) == 'advanced' and ((str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_gappy_sequences']) == 'yes' and str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes') or (str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes') and str($input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_sequences_with_gaps_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments']) == 'yes')):
134 --output_aln '$output_aln' 134 --output_aln '$output_aln'
135 --output_aln_dir '$output_aln.files_path' 135 --output_aln_dir '$output_aln.files_path'
136 #end if 136 #end if
137 </token> 137 </token>
138 <token name="@OUTPUT_TREE@"> 138 <token name="@OUTPUT_TREE@">