Mercurial > repos > greg > phylogenomics_analysis
comparison macros.xml @ 106:5e5db789406a draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 27 Mar 2017 13:51:09 -0400 |
| parents | e0fa1e2105f6 |
| children | 7e8be10d7957 |
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| 105:e0fa1e2105f6 | 106:5e5db789406a |
|---|---|
| 329 <param name="trim_type" type="select" label="Select process used for gap trimming"> | 329 <param name="trim_type" type="select" label="Select process used for gap trimming"> |
| 330 <option value="gap_trimming" selected="true">Nucleotide based </option> | 330 <option value="gap_trimming" selected="true">Nucleotide based </option> |
| 331 <option value="automated_trimming">Trim alignments using trimAl's ML heuristic trimming approach</option> | 331 <option value="automated_trimming">Trim alignments using trimAl's ML heuristic trimming approach</option> |
| 332 </param> | 332 </param> |
| 333 <when value="gap_trimming"> | 333 <when value="gap_trimming"> |
| 334 <param name="gap_trimming" type="float" value="0.1" min="0" max="1.0" label="Remove sites in alignments with gaps of" help="0.1 removes sites with 90% gaps" /> | 334 <param name="gap_trimming" type="float" value="0" min="0" max="1.0" label="Remove sites in alignments with gaps of" help="Zero value has no affect" /> |
| 335 </when> | 335 </when> |
| 336 <when value="automated_trimming" /> | 336 <when value="automated_trimming" /> |
| 337 </conditional> | 337 </conditional> |
| 338 <conditional name="remove_sequences_with_gaps_cond"> | 338 <conditional name="remove_sequences_with_gaps_cond"> |
| 339 <param name="remove_sequences_with_gaps" type="select" label="Remove sequences with specified gaps?"> | 339 <param name="remove_sequences_with_gaps" type="select" label="Remove sequences with specified gaps?"> |
| 342 </param> | 342 </param> |
| 343 <when value="no"> | 343 <when value="no"> |
| 344 <expand macro="cond_multiple_sequence_alignments" /> | 344 <expand macro="cond_multiple_sequence_alignments" /> |
| 345 </when> | 345 </when> |
| 346 <when value="yes"> | 346 <when value="yes"> |
| 347 <param name="remove_sequences_with_gaps_of" type="float" value="0.5" min="0" max="1" label="Remove sequences with gaps of" help="0.5 removes sequences with 50% gaps" /> | 347 <param name="remove_sequences_with_gaps_of" type="float" value="0" min="0" max="1" label="Remove sequences with gaps of" help="Zero value has no affect" /> |
| 348 <expand macro="cond_multiple_sequence_alignments_with_iterative_realignment" /> | 348 <expand macro="cond_multiple_sequence_alignments_with_iterative_realignment" /> |
| 349 </when> | 349 </when> |
| 350 </conditional> | 350 </conditional> |
| 351 </when> | 351 </when> |
| 352 </conditional> | 352 </conditional> |