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comparison macros.xml @ 104:4d78ec10c07e draft

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Uploaded
author greg
date Mon, 27 Mar 2017 11:00:32 -0400
parents 9c6b468d8db2
children e0fa1e2105f6
comparison
equal deleted inserted replaced
103:5a5f380bbf48 104:4d78ec10c07e
86 #else: 86 #else:
87 ## str($remove_sequences_with_gaps) == 'yes': 87 ## str($remove_sequences_with_gaps) == 'yes':
88 --remove_sequences $remove_sequences_with_gaps_of 88 --remove_sequences $remove_sequences_with_gaps_of
89 #if str($multiple_sequence_alignments) == 'yes': 89 #if str($multiple_sequence_alignments) == 'yes':
90 --alignments_method $multiple_sequence_alignments_option 90 --alignments_method $multiple_sequence_alignments_option
91 #if str($multiple_sequence_alignments_option) == 'pasta_alignments':
92 #if str($multiple_sequence_alignments_option) == 'pasta_alignments': 91 #if str($multiple_sequence_alignments_option) == 'pasta_alignments':
93 --pasta_script_path '$__tool_directory__/run_pasta.py' 92 --pasta_script_path '$__tool_directory__/run_pasta.py'
94 --pasta_iter_limit $pasta_iter_limit 93 --pasta_iter_limit $pasta_iter_limit
95 #else: 94 #else:
96 --iterative_realignment $iterative_realignment 95 --iterative_realignment $iterative_realignment