Mercurial > repos > greg > phylogenomics_analysis
comparison macros.xml @ 100:283f6666daf7 draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 27 Mar 2017 10:42:37 -0400 |
| parents | de42cdf6e10b |
| children | 9c6b468d8db2 |
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| 99:de42cdf6e10b | 100:283f6666daf7 |
|---|---|
| 343 <xml name="param_multiple_codon_alignments"> | 343 <xml name="param_multiple_codon_alignments"> |
| 344 <param name="multiple_codon_alignments" type="select" label="Construct orthogroup multiple codon alignments?"> | 344 <param name="multiple_codon_alignments" type="select" label="Construct orthogroup multiple codon alignments?"> |
| 345 <option value="no" selected="True">No</option> | 345 <option value="no" selected="True">No</option> |
| 346 <option value="yes">Yes</option> | 346 <option value="yes">Yes</option> |
| 347 </param> | 347 </param> |
| 348 </xml> | |
| 349 <xml name="output_ptortho"> | |
| 350 <data name="output_ptortho" format="ptortho"> | |
| 351 <filter>input_format_cond['input_format'] == 'ptortho'</filter> | |
| 352 </data> | |
| 353 </xml> | |
| 354 <xml name="output_ptorthocs"> | |
| 355 <data name="output_ptorthocs" format="ptorthocs"> | |
| 356 <filter>input_format_cond['input_format'] == 'ptorthocs'</filter> | |
| 357 </data> | |
| 358 </xml> | |
| 359 <xml name="output_aln"> | |
| 360 <data name="output_aln" format="ptalign" label="${tool.name} on ${on_string} (multiple alignments)"> | |
| 361 <filter>input_format_cond['options_type_cond']['options_type'] == 'advanced' and ((input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['remove_gappy_sequences'] == 'yes and input_format_cond['options_type_cond']['remove_gappy_sequences_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments'] == 'yes') or (input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes and input_format_cond['options_type_cond']['remove_sequences_with_gaps_cond']['multiple_sequence_alignments_cond']['multiple_sequence_alignments'] == 'yes'))</filter> | |
| 362 </data> | |
| 363 </xml> | |
| 364 <xml name="output_tree"> | |
| 365 <data name="output_tree" format="pttree" label="${tool.name} on ${on_string} (phylogenetic trees)"> | |
| 366 <filter>input_format_cond['options_type_cond']['options_type'] == 'advanced' and input_format_cond['options_type_cond']['phylogenetic_trees_cond']['phylogenetic_trees'] == 'yes'</filter> | |
| 367 </data> | |
| 348 </xml> | 368 </xml> |
| 349 <xml name="citations"> | 369 <xml name="citations"> |
| 350 <citations> | 370 <citations> |
| 351 <citation type="bibtex"> | 371 <citation type="bibtex"> |
| 352 @misc{None, | 372 @misc{None, |