# HG changeset patch
# User greg
# Date 1447526838 18000
# Node ID a357536fb3639a1dca7a0a3e575d9f5f654859d1

Uploaded

diff -r 000000000000 -r a357536fb363 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Nov 14 13:47:18 2015 -0500
@@ -0,0 +1,201 @@
+<?xml version="1.0"?>
+<tool_dependency>
+
+    <package name="icqsol" version="1.0">
+        <install version="1.0">
+            <actions_group>
+                <actions os="linux" architecture="x86_64">
+                    <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
+                    <action type="download_file" target_filename="Anaconda-2.3.0-Linux-x86_64.sh">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-Linux-x86_64.sh</action>
+                    <action type="shell_command">bash Anaconda-2.3.0-Linux-x86_64.sh -b -f -p $INSTALL_DIR</action>
+
+                    <!-- Install VTK 6.3.0 into the above Python -->
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
+                            export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
+                            export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
+                            conda install -c https://conda.anaconda.org/anaconda vtk --yes
+                        ]]>
+                    </action>
+
+                    <!-- Install and compile pycsg version 0.3.0 as a package in the above Python -->
+                    <action type="make_directory">$TMP_WORK_DIR/pycsg</action>
+                    <action type="change_directory">$TMP_WORK_DIR/pycsg</action>
+                    <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action>
+                    <action type="change_directory">pycsg</action>
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
+                            export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
+                            export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
+                            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
+                        ]]>
+                    </action>
+
+                    <!-- Install and compile pytriangle version 1.0 as a package in the above Python -->
+                    <action type="make_directory">$TMP_WORK_DIR/pytriangle</action>
+                    <action type="change_directory">$TMP_WORK_DIR/pytriangle</action>
+                    <action type="shell_command">git clone https://github.com/pletzer/pytriangle.git</action>
+                    <action type="change_directory">pytriangle</action>
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
+                            export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
+                            export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
+                            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
+                        ]]>
+                    </action>
+    
+                    <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
+                    <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
+                    <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
+                    <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
+                    <action type="change_directory">icqsol</action>
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
+                            export LD_LIBRARY_PATH=$INSTALL_DIR/lib:$LD_LIBRARY_PATH &&
+                            cmake -DINSTALL_USER=OFF -DINSTALL_PREFIX=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR
+                        ]]>
+                    </action>
+
+                    <action type="set_environment">
+                        <!--
+                        Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
+                        the right Python from the environment bin directory.
+                        -->
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="ANACONDAHOME">$INSTALL_DIR</environment_variable>
+                        <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                    </action>
+                </actions>
+
+                <actions os="darwin" architecture="x86_64">
+                    <!-- Install and compile Anaconda 2.3.0 which provides Python 2.7.10 -->
+                    <action type="download_file" target_filename="Anaconda-2.3.0-MacOSX-x86_64.sh">https://3230d63b5fc54e62148e-c95ac804525aac4b6dba79b00b39d1d3.ssl.cf1.rackcdn.com/Anaconda-2.3.0-MacOSX-x86_64.sh</action>
+                    <action type="shell_command">bash Anaconda-2.3.0-MacOSX-x86_64.sh -b -f -p $INSTALL_DIR</action>
+
+                    <!-- Install VTK 6.3.0 into the above Python -->
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/lib/python2.7/site-packages:$INSTALL_DIR/lib/python2.7:$INSTALL_DIR/lib:$INSTALL_DIR:$PYTHONPATH &&
+                            export DYLD_LIBRARY_PATH=$INSTALL_DIR/lib:$DYLD_LIBRARY_PATH &&
+                            export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
+                            conda install -c https://conda.anaconda.org/anaconda vtk --yes
+                        ]]>
+                    </action>
+                    <action type="shell_command">
+                        ln -s $INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin/vtkpython $INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin/python
+                    </action>
+
+                    <!-- Install and compile pycsg version 0.3.0 as a package in the above Python -->
+                    <action type="make_directory">$TMP_WORK_DIR/pycsg</action>
+                    <action type="change_directory">$TMP_WORK_DIR/pycsg</action>
+                    <action type="shell_command">git clone https://github.com/pletzer/pycsg.git</action>
+                    <action type="change_directory">pycsg</action>
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7/site-packages:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7:pkgs/vtk-6.3.0-py27_0/lib:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin &&
+                            export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &&
+                            export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH &&
+                            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
+                        ]]>
+                    </action>
+
+                    <!-- Install and compile pytriangle version 1.0 as a package in the above Python -->
+                    <action type="make_directory">$TMP_WORK_DIR/pytriangle</action>
+                    <action type="change_directory">$TMP_WORK_DIR/pytriangle</action>
+                    <action type="shell_command">git clone https://github.com/pletzer/pytriangle.git</action>
+                    <action type="change_directory">pytriangle</action>
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7/site-packages:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7:pkgs/vtk-6.3.0-py27_0/lib:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin &&
+                            export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &&
+                            export PKG_CONFIG_PATH=$INSTALL_DIR/lib/pkgconfig:$PKG_CONFIG_PATH
+                            $INSTALL_DIR/bin/python setup.py install --prefix=$INSTALL_DIR
+                        ]]>
+                    </action>
+    
+                    <!-- Install and compile icqsol version 1.0 as a package in the above Python -->
+                    <action type="make_directory">$TMP_WORK_DIR/icqsol</action>
+                    <action type="change_directory">$TMP_WORK_DIR/icqsol</action>
+                    <action type="shell_command">git clone https://github.com/pletzer/icqsol.git</action>
+                    <action type="change_directory">icqsol</action>
+                    <action type="shell_command">
+                        <![CDATA[
+                            export PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin:$PATH &&
+                            export PYTHONPATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7/site-packages:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib/python2.7:pkgs/vtk-6.3.0-py27_0/lib:$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/bin &&
+                            export DYLD_LIBRARY_PATH=$INSTALL_DIR/pkgs/vtk-6.3.0-py27_0/lib:$DYLD_LIBRARY_PATH &&
+                            cmake -DINSTALL_USER=OFF -DINSTALL_PREFIX=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR
+                        ]]>
+                    </action>
+
+                    <action type="set_environment">
+                        <!--
+                        Only the PATH environment variable needs to be modified for an Anaconda environment so that it gets
+                        the right Python from the environment bin directory.  The way Anaconda environments work is that they
+                        hard link everything that is installed into the environment.  For all intents and purposes, this means
+                        that each environment is a completely separate installation of Python and all the packages.  By using
+                        hard links, this is done efficiently. Thus, there's no need to mess with PYTHONPATH because the Python
+                        binary in the environment already searches the site-packages in the environment, and the lib of the
+                        environment, and so on.
+                        -->
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="ANACONDAHOME">$INSTALL_DIR</environment_variable>
+                        <environment_variable action="set_to" name="ICQSOL_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                    </action>
+                </actions>
+            </actions_group>
+        </install>
+        <readme>
+<![CDATA[
+This installation recipe installs the Anaconda version 2.3.0 of the Python programming language
+version 2.7.10.  Anaconda is a completely free Python distribution (including for commercial use
+and redistribution). It includes more than 300 of the most popular Python packages for science,
+math, engineering, and data analysis.  This list of packages is available at
+http://docs.continuum.io/anaconda/pkg-docs.
+
+1) VTK version 6.3.0
+
+The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D
+computer graphics, modeling, image processing, volume rendering, scientific visualization, and
+information visualization. VTK also includes ancillary support for 3D interaction widgets, two-
+and three-dimensional annotation, and parallel computing.  At its core, VTK is implemented as a
+C++ toolkit, requiring users to build applications by combining various objects into an application.
+The system also supports automated wrapping of the C++ core into Python, Java, and Tcl, so VTK
+applications may also be written using these interpreted programming languages.
+
+VTK employs Kitware’s Quality Software Process (CMake, CTest, CDash, and CPack) to build, test,
+and package the system, making VTK a cross-platform application dependent on test-driven development
+and extreme programming, and enabling the application to produce high-quality, robust code. VTK is
+used world-wide in commercial applications, as well as in research and development. It is the basis
+for many advanced visualization applications such as ParaView, VisIt, VisTrails, Slicer, MayaVi, and
+OsiriX.
+
+3) Pycsg version 0.3.0
+
+Constructive Solid Geometry (CSG) is a modeling technique that uses Boolean operations like union and
+intersection to combine 3D solids. This library implements CSG operations on meshes elegantly and
+concisely using BSP trees, and is meant to serve as an easily understandable implementation of the
+algorithm. All edge cases involving overlapping coplanar polygons in both solids are correctly handled.
+
+4) Pytriangle version 1.0
+
+Pytriangle is a python interface to the 2D triangulation program originally written by Jonathan Richard Shewchuck
+
+5) Icqsol version 1.0
+
+Icqsol is a collection of tools for constructing and solving partial differential equations.
+            ]]>
+
+        </readme>
+    </package>
+</tool_dependency>