Mercurial > repos > greg > multilocus_genotype

comparison multilocus_genotype.xml @ 13:6b8061a95c04 draft

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Uploaded
author greg
date Sun, 09 Dec 2018 09:23:36 -0500
parents c755744296ca
children 1190ee1456f6
comparison
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12:ea2914ddea50 13:6b8061a95c04
26 --input_vcf '$input_vcf' 26 --input_vcf '$input_vcf'
27 --output_stag_db_report '$output_stag_db_report' 27 --output_stag_db_report '$output_stag_db_report'
28 &> multilocus_genotype.log; 28 &> multilocus_genotype.log;
29 if [[ $? -ne 0 ]]; then 29 if [[ $? -ne 0 ]]; then
30 cp multilocus_genotype.log '$output_stag_db_report'; 30 cp multilocus_genotype.log '$output_stag_db_report';
31 esit 1; 31 exit 1;
32 fi]]></command> 32 fi]]></command>
33 <inputs> 33 <inputs>
34 <param name="input_vcf" type="data" format="vcf" label="VCF file" /> 34 <param name="input_vcf" type="data" format="vcf" label="VCF file" />
35 <param name="input_affy_metadata" type="data" format="tabular" label="Affymetrix 96 well plate file" /> 35 <param name="input_affy_metadata" type="data" format="tabular" label="Affymetrix 96 well plate file" />
36 <param name="input_pop_info" type="data" format="txt" label="Genotype population information file" /> 36 <param name="input_pop_info" type="data" format="txt" label="Genotype population information file" />