# HG changeset patch
# User greg
# Date 1481723199 18000
# Node ID 7a5a2e70b588d8f8858eec00f745ed13a8887cd0
# Parent  71b0f24e12f6365eb205f0674c503a7cc6dbcd0c
Uploaded

diff -r 71b0f24e12f6 -r 7a5a2e70b588 multigps.xml
--- a/multigps.xml	Wed Dec 14 08:31:55 2016 -0500
+++ b/multigps.xml	Wed Dec 14 08:46:39 2016 -0500
@@ -46,6 +46,7 @@
                         #set tmp_seq_file = os.path.join($seq_dir, $tmp_filename)
                         ln -f -s $tmp_seq_file $seq_file &&
                     #end if
+                    --seq_dir $seq_dir
                 #end if
                 ############################
                 ## Limits on how many reads