# HG changeset patch
# User greg
# Date 1487691307 18000
# Node ID 381efb7b880feaa60bf001576ba005fb083bbf27
# Parent  6997a4b160c57427db7de0b40c142a44200157a0
Uploaded

diff -r 6997a4b160c5 -r 381efb7b880f macros.xml
--- a/macros.xml	Tue Feb 21 10:34:57 2017 -0500
+++ b/macros.xml	Tue Feb 21 10:35:07 2017 -0500
@@ -1,46 +1,8 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <macros>
-    <xml name="requirements">
-        <requirements>
-            <requirement type="package" version="3.14.0">bioconductor-edger</requirement>
-            <requirement type="package" version="4.11.1">meme</requirement>
-            <requirement type="package" version="0.5">multigps</requirement>
-        </requirements>
-    </xml>
-    <xml name="stdio">
-        <stdio>
-            <exit_code range="1:"/>
-            <exit_code range=":-1"/>
-            <regex match="Error:"/>
-            <regex match="Exception:"/>
-        </stdio>
-    </xml>
-    <xml name="rd_cond">
-        <conditional name="read_distribution_cond">
-            <param name="read_distribution" type="select" label="Use read distribution file for this replicate?" help="Selecting No uses default distribution.">
-                <option value="no" selected="True">No</option>
-                <option value="yes">Yes</option>
-            </param>
-            <when value="yes">
-                <param name="read_distribution_file" type="data" format="tabular" label="Read distribution file" />
-            </when>
-            <when value="no" />
-        </conditional>
-    </xml>
-    <xml name="frc_param">
-        <param  name="fixed_read_count" type="select" label="Use fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution.">
-            <option value="no" selected="True">No</option>
-            <option value="yes">Yes</option>
-        </param>
-    </xml>
     <xml name="motif_finding_params">
         <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" />
         <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" />
         <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" />
     </xml>
-    <xml name="citations">
-        <citations>
-            <citation type="doi">10.1371/journal.pcbi.1003501</citation>
-        </citations>
-    </xml>
 </macros>