Mercurial > repos > greg > multigps

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	<head><title>MultiGPS results (dataset_3100_files)</title></head>
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	<body>
	<h1>MultiGPS results (dataset_3100_files)</h1>
	<p>MultiGPS version 0.5 run completed on: 2016/01/02 13:09:13 with arguments:
  --verbose --threads 1 --geninfo /Users/gvk/work/git_workspace/galaxy/tool-data/shared/ucsc/chrom/sacCer3.len --seq ./database/tmp/tmp-multigps-seq-diryUz22y --probshared 0.900000 --r 3 --minmodelupdateevents 0 --nomodelsmoothing --gaussmodelsmoothing --gausssmoothparam 3 --design design.tabular --out /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files
</p>
	<h2>Binding events</h2>
	<table>
		<tr>		<th>Condition</th>
		<th>Events</th>
		<th>File</th>
		<th>Positional Prior Motif</th>
		<th>Motif Relative Offset</th>
		</tr>
		<tr>		<td>Abf1</td>
		<td>0</td>
		<td><a href='dataset_3100_files_Abf1.events'>dataset_3100_files_Abf1.events</a></td>
		<td>No motif found</td>
		<td>NA</td>
		</tr>
	</table>
	<h2>Input data</h2>
	<table>
		<tr>		<th>Replicate</th>
		<th>ReadCount</th>
		<th>CtrlScaling</th>
		<th>SignalFraction</th>
		<th>ReadDistributionModel</th>
		</tr>
		<tr>		<td>Abf1 1</td>
		<td>0.0</td>
		<td>NA</td>
		<td>NaN</td>
		<td><a href='#' onclick='return fullpopitup("images/dataset_3100_files_Abf1-1_Read_Distributions.png")'><img src='images/dataset_3100_files_Abf1-1_Read_Distributions.png' height='300'></a></td>
		</tr>
	</table>
	<h2>Miscellaneous files</h2>
	<p><a href='dataset_3100_files.motifs'>Positional prior motifs.</a> Try inputting these motifs into <a href='http://www.benoslab.pitt.edu/stamp/'>STAMP</a> for validation.</p>
	<p><a href='intermediate-results/dataset_3100_files.intraCondPeakDistances.histo.txt'>Peak-peak distance histograms (same condition)</a></p>
	<p><a href='intermediate-results/dataset_3100_files.peaks2motifs.histo.txt'>Peak-motif distance histograms</a></p>
	</body>
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author	greg
date	Tue, 05 Jan 2016 08:19:39 -0500
parents	7b15099378a7
children