Mercurial > repos > greg > multigps
diff test-data/output_html1.html @ 5:7b15099378a7 draft
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| author | greg |
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| date | Sat, 02 Jan 2016 14:07:37 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_html1.html Sat Jan 02 14:07:37 2016 -0500 @@ -0,0 +1,48 @@ +<html> + <head><title>MultiGPS results (dataset_3100_files)</title></head> + <style type='text/css'>/* <![CDATA[ */ table, th{border-color: #600;border-style: solid;} td{border-color: #600;border-style: solid;} table{border-width: 0 0 1px 1px; border-spacing: 0;border-collapse: collapse;} th{margin: 0;padding: 4px;border-width: 1px 1px 0 0;} td{margin: 0;padding: 4px;border-width: 1px 1px 0 0;} /* ]]> */</style> + <script language='javascript' type='text/javascript'><!-- +function motifpopitup(url) { newwindow=window.open(url,'name','height=75'); if (window.focus) {newwindow.focus()} return false;}// --></script> + <script language='javascript' type='text/javascript'><!-- +function fullpopitup(url) { newwindow=window.open(url,'name'); if (window.focus) {newwindow.focus()} return false;}// --></script> + <body> + <h1>MultiGPS results (dataset_3100_files)</h1> + <p>MultiGPS version 0.5 run completed on: 2016/01/02 13:09:13 with arguments: + --verbose --threads 1 --geninfo /Users/gvk/work/git_workspace/galaxy/tool-data/shared/ucsc/chrom/sacCer3.len --seq ./database/tmp/tmp-multigps-seq-diryUz22y --probshared 0.900000 --r 3 --minmodelupdateevents 0 --nomodelsmoothing --gaussmodelsmoothing --gausssmoothparam 3 --design design.tabular --out /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files +</p> + <h2>Binding events</h2> + <table> + <tr> <th>Condition</th> + <th>Events</th> + <th>File</th> + <th>Positional Prior Motif</th> + <th>Motif Relative Offset</th> + </tr> + <tr> <td>Abf1</td> + <td>0</td> + <td><a href='dataset_3100_files_Abf1.events'>dataset_3100_files_Abf1.events</a></td> + <td>No motif found</td> + <td>NA</td> + </tr> + </table> + <h2>Input data</h2> + <table> + <tr> <th>Replicate</th> + <th>ReadCount</th> + <th>CtrlScaling</th> + <th>SignalFraction</th> + <th>ReadDistributionModel</th> + </tr> + <tr> <td>Abf1 1</td> + <td>0.0</td> + <td>NA</td> + <td>NaN</td> + <td><a href='#' onclick='return fullpopitup("images/dataset_3100_files_Abf1-1_Read_Distributions.png")'><img src='images/dataset_3100_files_Abf1-1_Read_Distributions.png' height='300'></a></td> + </tr> + </table> + <h2>Miscellaneous files</h2> + <p><a href='dataset_3100_files.motifs'>Positional prior motifs.</a> Try inputting these motifs into <a href='http://www.benoslab.pitt.edu/stamp/'>STAMP</a> for validation.</p> + <p><a href='intermediate-results/dataset_3100_files.intraCondPeakDistances.histo.txt'>Peak-peak distance histograms (same condition)</a></p> + <p><a href='intermediate-results/dataset_3100_files.peaks2motifs.histo.txt'>Peak-motif distance histograms</a></p> + </body> +</html>