--- a/multigps.xml	Tue Dec 13 14:49:54 2016 -0500
+++ b/multigps.xml	Tue Dec 13 15:07:21 2016 -0500
@@ -25,16 +25,17 @@
             ## Advanced options
             ############################
             #set aoc = $advanced_options_cond
+            #set bmsc = $aoc.binding_model_smoothing_cond
+            #set gmsc = $aoc.gauss_model_smoothing_cond
+            #set rbec = $aoc.report_binding_events_cond
+            #set rloc = $aoc.reads_limits_options_cond
+            #set sdc = $aoc.scale_data_cond
+            #set umc = $aoc.use_motif_cond
+            #set mpc = $umc.multigps_priors_cond
+            #set bmc = $mpc.both_motifs_cond
+            #set mfoc = $bmc.nomotifprior_cond
+            #set rgc = $umc.reference_genome_cond
             #if str($aoc.advanced_options) == 'display':
-                #set bmsc = $aoc.binding_model_smoothing_cond
-                #set gmsc = $aoc.gauss_model_smoothing_cond
-                #set rbec = $aoc.report_binding_events_cond
-                #set rloc = $aoc.reads_limits_options_cond
-                #set sdc = $aoc.scale_data_cond
-                #set umc = $aoc.use_motif_cond
-                #set mpc = $umc.multigps_priors_cond
-                #set bmc = $mpc.both_motifs_cond
-                #set rgc = $umc.reference_genome_cond
                 ############################
                 ## Limits on how many reads
                 ############################
@@ -132,7 +133,6 @@
                             --mememaxw $bmc.mememaxw
                         #else:
                             --nomotifs
-                            #set mfoc = $bmc.nomotifprior_cond
                             --nomotifprior $mfoc.nomotifprior
                             #if str($mfoc.nomotifprior) == 'yes':
                                 --memenmotifs $mfoc.memenmotifs