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comparison multigps.xml @ 30:9aca70ab05c2 draft

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Uploaded
author greg
date Wed, 14 Dec 2016 08:21:48 -0500
parents 181901dbd7eb
children 71b0f24e12f6
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29:181901dbd7eb 30:9aca70ab05c2
19 #end if 19 #end if
20 #if str($verbose) == 'yes': 20 #if str($verbose) == 'yes':
21 --verbose 21 --verbose
22 #end if 22 #end if
23 --threads="\${GALAXY_SLOTS:-4}" 23 --threads="\${GALAXY_SLOTS:-4}"
24 --geninfo "$chromInfo"
24 ############################ 25 ############################
25 ## Advanced options 26 ## Advanced options
26 ############################ 27 ############################
27 #set aoc = $advanced_options_cond 28 #set aoc = $advanced_options_cond
28 #if str($aoc.advanced_options) == 'display': 29 #if str($aoc.advanced_options) == 'display':
116 #set tmp_filename = "%s.fa" % str($rgc.reference_genome.dbkey) 117 #set tmp_filename = "%s.fa" % str($rgc.reference_genome.dbkey)
117 #set tmp_seq_file = os.path.join($seq_dir, $tmp_filename) 118 #set tmp_seq_file = os.path.join($seq_dir, $tmp_filename)
118 ln -f -s $tmp_seq_file $seq_file && 119 ln -f -s $tmp_seq_file $seq_file &&
119 #end if 120 #end if
120 --seq $seq_dir 121 --seq $seq_dir
121 --geninfo "$chromInfo"
122 #if str($mpc.multigps_priors) == 'yes': 122 #if str($mpc.multigps_priors) == 'yes':
123 #set bmc = $mpc.both_motifs_cond 123 #set bmc = $mpc.both_motifs_cond
124 #if str($mpc.noposprior) == 'no': 124 #if str($mpc.noposprior) == 'no':
125 --noposprior 125 --noposprior
126 #end if 126 #end if