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author greg
date Sat, 02 Jan 2016 14:07:37 -0500
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4:32cff4d1d0ff 5:7b15099378a7
1 <html>
2 <head><title>MultiGPS results (dataset_3100_files)</title></head>
3 <style type='text/css'>/* <![CDATA[ */ table, th{border-color: #600;border-style: solid;} td{border-color: #600;border-style: solid;} table{border-width: 0 0 1px 1px; border-spacing: 0;border-collapse: collapse;} th{margin: 0;padding: 4px;border-width: 1px 1px 0 0;} td{margin: 0;padding: 4px;border-width: 1px 1px 0 0;} /* ]]> */</style>
4 <script language='javascript' type='text/javascript'><!--
5 function motifpopitup(url) { newwindow=window.open(url,'name','height=75'); if (window.focus) {newwindow.focus()} return false;}// --></script>
6 <script language='javascript' type='text/javascript'><!--
7 function fullpopitup(url) { newwindow=window.open(url,'name'); if (window.focus) {newwindow.focus()} return false;}// --></script>
8 <body>
9 <h1>MultiGPS results (dataset_3100_files)</h1>
10 <p>MultiGPS version 0.5 run completed on: 2016/01/02 13:09:13 with arguments:
11 --verbose --threads 1 --geninfo /Users/gvk/work/git_workspace/galaxy/tool-data/shared/ucsc/chrom/sacCer3.len --seq ./database/tmp/tmp-multigps-seq-diryUz22y --probshared 0.900000 --r 3 --minmodelupdateevents 0 --nomodelsmoothing --gaussmodelsmoothing --gausssmoothparam 3 --design design.tabular --out /Users/gvk/work/git_workspace/galaxy/database/job_working_directory/002/2194/dataset_3100_files
12 </p>
13 <h2>Binding events</h2>
14 <table>
15 <tr> <th>Condition</th>
16 <th>Events</th>
17 <th>File</th>
18 <th>Positional Prior Motif</th>
19 <th>Motif Relative Offset</th>
20 </tr>
21 <tr> <td>Abf1</td>
22 <td>0</td>
23 <td><a href='dataset_3100_files_Abf1.events'>dataset_3100_files_Abf1.events</a></td>
24 <td>No motif found</td>
25 <td>NA</td>
26 </tr>
27 </table>
28 <h2>Input data</h2>
29 <table>
30 <tr> <th>Replicate</th>
31 <th>ReadCount</th>
32 <th>CtrlScaling</th>
33 <th>SignalFraction</th>
34 <th>ReadDistributionModel</th>
35 </tr>
36 <tr> <td>Abf1 1</td>
37 <td>0.0</td>
38 <td>NA</td>
39 <td>NaN</td>
40 <td><a href='#' onclick='return fullpopitup("images/dataset_3100_files_Abf1-1_Read_Distributions.png")'><img src='images/dataset_3100_files_Abf1-1_Read_Distributions.png' height='300'></a></td>
41 </tr>
42 </table>
43 <h2>Miscellaneous files</h2>
44 <p><a href='dataset_3100_files.motifs'>Positional prior motifs.</a> Try inputting these motifs into <a href='http://www.benoslab.pitt.edu/stamp/'>STAMP</a> for validation.</p>
45 <p><a href='intermediate-results/dataset_3100_files.intraCondPeakDistances.histo.txt'>Peak-peak distance histograms (same condition)</a></p>
46 <p><a href='intermediate-results/dataset_3100_files.peaks2motifs.histo.txt'>Peak-motif distance histograms</a></p>
47 </body>
48 </html>