Mercurial > repos > greg > multigps
comparison multigps.xml @ 39:755735c18b1c draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 14 Dec 2016 10:46:50 -0500 |
| parents | d494b8f8989c |
| children | 55202c4e2da6 |
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| 38:d494b8f8989c | 39:755735c18b1c |
|---|---|
| 88 #end if | 88 #end if |
| 89 #end if | 89 #end if |
| 90 ############################ | 90 ############################ |
| 91 ## Running MultiGPS | 91 ## Running MultiGPS |
| 92 ############################ | 92 ############################ |
| 93 #if str($aoc.readdistributionfile) != 'None': | |
| 94 --d "$aoc.readdistributionfile" | |
| 95 #end if | |
| 96 --r $aoc.maxtrainingrounds | |
| 93 #if str($aoc.nomodelupdate) == 'no': | 97 #if str($aoc.nomodelupdate) == 'no': |
| 94 --nomodelupdate | 98 --nomodelupdate |
| 95 #end if | 99 #end if |
| 96 --minmodelupdateevents $aoc.minmodelupdateevents | 100 --minmodelupdateevents $aoc.minmodelupdateevents |
| 97 #if str($bmsc.nomodelsmoothing) == 'no': | 101 #if str($bmsc.nomodelsmoothing) == 'no': |
| 248 <!-- | 252 <!-- |
| 249 ############################ | 253 ############################ |
| 250 ## Running MultiGPS | 254 ## Running MultiGPS |
| 251 ############################ | 255 ############################ |
| 252 --> | 256 --> |
| 257 <param name="readdistributionfile" type="data" optional="True" format="tabular" label="Optional binding event read distribution file for initializing models" help="A default initial distribution appropriate for ChIP-seq data is used if this option is not specified." /> | |
| 258 <param name="maxtrainingrounds" type="integer" value="3" min="0" label="Maximum number of training rounds for updating binding event read distributions" /> | |
| 253 <param name="nomodelupdate" type="select" label="Perform binding model updates?"> | 259 <param name="nomodelupdate" type="select" label="Perform binding model updates?"> |
| 254 <option value="yes" selected="True">Yes</option> | 260 <option value="yes" selected="True">Yes</option> |
| 255 <option value="no">No</option> | 261 <option value="no">No</option> |
| 256 </param> | 262 </param> |
| 257 <param name="minmodelupdateevents" type="integer" value="500" min="0" label="Minimum number of events to support an update of the read distribution" /> | 263 <param name="minmodelupdateevents" type="integer" value="500" min="0" label="Minimum number of events to support an update of the read distribution" /> |