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comparison macros.xml @ 51:4c5540844bb3 draft default tip

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author greg
date Wed, 05 Sep 2018 08:54:21 -0400
parents 381efb7b880f
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50:20687c85887e 51:4c5540844bb3
3 <xml name="motif_finding_params"> 3 <xml name="motif_finding_params">
4 <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" /> 4 <param name="memenmotifs" type="integer" min="0" value="3" label="Number of motifs MEME should find for each condition" />
5 <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" /> 5 <param name="mememinw" type="integer" min="0" value="6" label="Minimum motif width for MEME" />
6 <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" /> 6 <param name="mememaxw" type="integer" min="0" value="16" label="Maximum motif width for MEME" />
7 </xml> 7 </xml>
8 <xml name="param_experiment_type">
9 <param name="experiment_type" type="select" display="radio" label="Experiment type for this replicate">
10 <option value="chipseq" selected="True">ChIP-seq</option>
11 <option value="chipexo">ChIP-exo</option>
12 </param>
13 </xml>
14 <xml name="cond_fixedreadcount">
15 <conditional name="fixedreadcount_cond">
16 <param name="fixedreadcount_select" type="select" label="Set fixed per-base read count limit for this replicate?" help="Selecting No uses a global per-base limit that is estimated from a Poisson distribution.">
17 <option value="no" selected="True">No</option>
18 <option value="yes">Yes</option>
19 </param>
20 <when value="no"/>
21 <when value="yes">
22 <param name="fixedreadcount" type="integer" value="0" min="0" label="Fixed per-base read count limit"/>
23 </when>
24 </conditional>
25 </xml>
8 </macros> 26 </macros>
27