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comparison test-data/meme_output_html_2.html @ 6:4df8e9f58a53 draft default tip

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author greg
date Wed, 06 Jul 2016 10:25:06 -0400
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5:e85346ab5054 6:4df8e9f58a53
1 <!DOCTYPE HTML>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <title>MEME</title>
6 <script>
7 // @JSON_VAR data
8 var data = {
9 "program": "MEME",
10 "version": "4.11.0",
11 "release": "Thu Nov 26 17:48:49 2015 +1000",
12 "stop_reason": "Stopped because requested number of motifs (1) found.",
13 "cmd": [
14 "meme",
15 ],
16 "options": {
17 "mod": "zoops",
18 "revcomp": false,
19 "nmotifs": 1,
20 "minw": 8,
21 "maxw": 50,
22 "minsites": 2,
23 "maxsites": 30,
24 "wnsites": 0.8,
25 "spmap": "uni",
26 "spfuzz": 0.5,
27 "maxwords": -1,
28 "prior": "dirichlet",
29 "b": 0.01,
30 "maxiter": 50,
31 "distance": 0.001,
32 "wg": 11,
33 "ws": 1,
34 "noendgaps": false,
35 "substring": true
36 },
37 "alphabet": {
38 "name": "DNA",
39 "like": "dna",
40 "ncore": 4,
41 "symbols": [
42 {
43 "symbol": "A",
44 "name": "Adenine",
45 "colour": "CC0000",
46 "complement": "T"
47 }, {
48 "symbol": "C",
49 "name": "Cytosine",
50 "colour": "0000CC",
51 "complement": "G"
52 }, {
53 "symbol": "G",
54 "name": "Guanine",
55 "colour": "FFB300",
56 "complement": "C"
57 }, {
58 "symbol": "T",
59 "aliases": "U",
60 "name": "Thymine",
61 "colour": "008000",
62 "complement": "A"
63 }, {
64 "symbol": "N",
65 "aliases": "X.",
66 "name": "Any base",
67 "equals": "ACGT"
68 }, {
69 "symbol": "V",
70 "name": "Not T",
71 "equals": "ACG"
72 }, {
73 "symbol": "H",
74 "name": "Not G",
75 "equals": "ACT"
76 }, {
77 "symbol": "D",
78 "name": "Not C",
79 "equals": "AGT"
80 }, {
81 "symbol": "B",
82 "name": "Not A",
83 "equals": "CGT"
84 }, {
85 "symbol": "M",
86 "name": "Amino",
87 "equals": "AC"
88 }, {
89 "symbol": "R",
90 "name": "Purine",
91 "equals": "AG"